NISEI

                 I found out that she's dying. Along with a lot of other women who claim to be dying too.                           All of them who say that they've had these implanted in them. It's the same thing                                       that I had removed from my own neck.

A group of Japanese men enter a train carriage and are conducting an autopsy when armed men surprise them and open fire. The scene was being recorded and transmitted via satellite. A mail order videotape of the recording, sold as an alien autopsy, blossoms into a much more complicated investigation when agents Mulder and Scully find the distributor of the tape murdered in his own home apparently by a high-ranking Japanese diplomat. Mulder fails to turn in the diplomat's briefcase and this has a list of Mutual UFO Network members and satellite photographs of a ship, the Talapus. Scully investigates the MUFON group and discovers several women who claim to know her from her abduction experience. They have similar implants to Scully's and inform her that they are all dying. Meanwhile the diplomat is murdered by the mysterious Red Haired Man.

Mulder consults the Lone Gunmen on the background of the Talapus and he heads to the port it had docked in. Told that the ship has left the port, he has a look around anyway and breaks into the ship. However, his activity has not gone unnoticed, and an armed team of men board the vessel; Mulder is able to escape by diving into the water. Later that night he comes across much activity around a warehouse and looks in through a window to see a strange craft that he believes to be an alien craft recovered by the Talapus.

Further investigating the satellite photos, Mulder believes in a secret government railway is being used to conduct covert activities. Using information provided by Senator Matheson, Mulder finds a similar train carriage to the one in the video and observes an alien-like test subject in a protective suit being transported in it. Meanwhile Scully watches the alien autopsy video again and realizes that she recognizes one of the Japanese scientists in it, a Dr. Shiro Zama. Mulder heads to the train station to catch the train that the carriage has been attached to. The Red Haired Man murders Dr. Zama's colleague, forcing him to board the train alone. Mulder narrowly misses the train, so he proceeds in his car to a spot further on the line and is ready to leap on to the train from a bridge when he receives a call from Scully. She has just been contacted by X, who warns her not to let Mulder get on the train. He listens to Scully but feels he has to find out what is in the carriage and jumps onto the top of the train.

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